PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016494721.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 429aa    MW: 48205.9 Da    PI: 9.0019
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016494721.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-065375123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C++ F r  nL+ H r+H
  XP_016494721.1 53 YVCEICNQGFQRDQNLQMHRRRH 75
                    9*********************9 PP

2zf-C2H216.13.1e-05130152123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k +  +s++k H++t+
  XP_016494721.1 130 WVCEKCSKGYAVQSDYKAHLKTC 152
                     58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-55275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.6E-55275No hitNo description
PROSITE profilePS5015710.975375IPR007087Zinc finger, C2H2
SMARTSM003550.00525375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
PROSITE patternPS01359055135IPR019786Zinc finger, PHD-type, conserved site
SMARTSM0035519094124IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.4E-4121151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.6E-5125150No hitNo description
SMARTSM0035560130157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MLSNNPSSSS DPFTCSENGN NANRRKRRPA GTPDPDAEVV SLSPKTLLES DRYVCEICNQ  60
GFQRDQNLQM HRRRHKVPWK LLKRETPIVR KRVFVCPEPT CLHHDPCHAL GDLVGIKKHF  120
RRKHSNHKQW VCEKCSKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES FIEHQDACSM  180
GRLRSESQSL HPSNCLSRTA SSPSPSSDTN LSTTPWATTL LQNLSSSTAT HHVNPNIIKN  240
STKQRHNLEL QLLTTTTSSS SPFDVSVSSK PNEDHSTYNL QLSIGSSDFN ERNESSENAT  300
ALDALKLKDE AREQLKLAMA EKAYAEEARQ QTKRQIELAE QEFANAKRIR QQAQVELDKA  360
NALKKQAIKQ INSTLSQITC HSCKQKFQAP PSDENNSLTL SYISSALTEG HHEVGKNINE  420
TNHLKLSQR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016494721.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-155IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLM1D2C60.0M1D2C6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000797350.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-149C2H2-like zinc finger protein